L31 Transposons of Hexacorallia: Distribution, Diversity and Evolution

Мұқаба

Дәйексөз келтіру

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Ашық рұқсат Ашық рұқсат
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Рұқсат жабық Тек жазылушылар үшін

Аннотация

Transposable elements (TE) of eukaryotes – retrotransposons and DNA transposons – are nucleotide sequences that can move from locus to locus of the genome, as well as between the genomes of different organisms. L31 DNA transposons are an ancient and diverse group belonging to the large IS630/Tc1/mariner group. L31 transposons are not widespread and are present in a limited number of taxa. In addition to the sequence encoding the DDE/D transposase, L31 transposons carry another ORF (ORF2). Detailed analysis of L31 elements in the genomes of six-rayed corals has provided detailed information on the distribution, diversity and structure of the elements. Two large groups, L31-duo and L31-uno, were identified, differing in both catalytic domain pattern and structure. As a result of reconstruction of the evolution of L31 transposons, it was suggested that six-rayed corals received L31 transposons from bivalves. At the same time, the split-off group L31-uno may have been obtained by mollusks as a result of horizontal transfer from corals. Studies of the distribution and diversity of TE in marine invertebrates will contribute to a better understanding of the evolutionary processes of TE and their role in the evolutionary history of species.

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Рұқсат жабық

Авторлар туралы

L. Puzakova

Kovalevsky Institute of Biology of the Southern Seas of Russian Academy of Sciences

Email: puzakov.mikh@yandex.ru
Ресей, Sevastopol, 299011

M. Puzakov

Kovalevsky Institute of Biology of the Southern Seas of Russian Academy of Sciences

Хат алмасуға жауапты Автор.
Email: puzakov.mikh@yandex.ru
Ресей, Sevastopol, 299011

P. Puzakova

Lomonosov Moscow State University, Branch in Sevastopol

Email: puzakov.mikh@yandex.ru
Ресей, Sevastopol, 299001

Әдебиет тізімі

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2. Fig. 1. The structure of transposons of the superfamily L31. 1 tpn–1000 pn; KIP/SIP – terminal inverted repeats or sub-terminal inverted repeats; OPC – an open reading frame encoding a transposase; OPC2 – an open reading frame encoding a protein with an unknown function.

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3. Fig. 2. Phylogenetic diversity of L31 transposons. A graphical representation of the generalized sequences of the fragment of the region of the second aspartate of the catalytic domain of the transposase of six-ray corals is indicated to the right of the dendrogram. Bootstrap values of less than 50% are not indicated on the dendrogram.

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4. Fig. 3. Multiple alignment of L31 transposase sequences-transposons of six-ray corals. The names of potentially functional elements are indicated in bold italics. The α-helices of the DNA-binding domain are highlighted in gray. The intended NLS is indicated in bold italics. The DDE triad of the catalytic domain is shown in black. The GPRK motif is indicated in bold and underlined.

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