Protein repeats show clade-specific volatility in Aves

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Abstract

Protein repeats are a source of rapid evolutionary and functional novelty. Repeats are crucial in development, neurogenesis, immunity, and disease. Repeat length variability and purity can alter the outcome of a pathway by altering the protein structure and affecting the protein-protein interaction affinity. Such rampant alterations can facilitate species to rapidly adapt to new environments or acquire various morphological/physiological features. With more than 11.000 species, the avian clade is one of the most speciose vertebrate clades, with near-ubiquitous distribution globally. Explosive adaptive radiation and functional diversification facilitated the birds to occupy various habitats. High diversity in morphology, physiology, flight pattern, behavior, coloration, and life histories make birds ideal for studying protein repeats’ role in evolutionary novelty. Our results demonstrate a similar repeat diversity and proportion of repeats across all the avian orders considered, implying an essential role of repeats in necessary pathways. We detected positively selected sites in the polyQ repeat of RUNX2 in the avian clade; and considerable repeat length contraction in the Psittacopasserae. The repeats show a species-wide bias towards a contraction in Galloanseriformes. Interestingly, we detected the length contrast of polyS repeat in PCDH20 between Galliformes and Anseriformes. We speculate that length variability of serine repeat and its interaction with β-catenin in the Wnt/β-catenin signalling pathway could have facilitated fowls to adapt to their respective environmental conditions. We believe our study emphasizes the role of protein repeats in functional/morphological diversification in birds. We also provide an extensive list of genes with considerable repeat length contrast to further explore the role of length volatility in evolutionary novelty and rapid functional diversification.

About the authors

S. Sharma

IISER Bhopal

Email: nagarjun@iiserb.ac.in

Computational Evolutionary Genomics Laboratory, Department of Biological Sciences

India, Bhauri, Madhya Pradesh, 462066

L. Teekas

IISER Bhopal

Email: nagarjun@iiserb.ac.in

Computational Evolutionary Genomics Laboratory, Department of Biological Sciences

India, Bhauri, Madhya Pradesh, 462066

N. Vijay

IISER Bhopal

Author for correspondence.
Email: nagarjun@iiserb.ac.in

Computational Evolutionary Genomics Laboratory, Department of Biological Sciences

India, Bhauri, Madhya Pradesh, 462066

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